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A travel guide to Cytoscape plugins.

Authors
Type
Published Article
Journal
Nature Methods
Publisher
Springer Nature
Volume
9
Issue
11
Pages
1069–1076
Identifiers
DOI: 10.1038/nmeth.2212
Source
Ideker Lab
License
Unknown

Abstract

Cytoscape is open-source software for integration, visualization and analysis of biological networks. It can be extended through Cytoscape plugins, enabling a broad community of scientists to contribute useful features. This growth has occurred organically through the independent efforts of diverse authors, yielding a powerful but heterogeneous set of tools. We present a travel guide to the world of plugins, covering the 152 publicly available plugins for Cytoscape 2.5-2.8. We also describe ongoing efforts to distribute, organize and maintain the quality of the collection.

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