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SAM-T08, HMM-based protein structure prediction.

Authors
Type
Published Article
Journal
Nucleic Acids Research
Publisher
Oxford University Press
Volume
37
Issue
Web Server issue
Pages
492–497
Identifiers
DOI: 10.1093/nar/gkp403
Source
UCSC Bioengineering biomedical-ucsc
License
Unknown

Abstract

The SAM-T08 web server is a protein structure prediction server that provides several useful intermediate results in addition to the final predicted 3D structure: three multiple sequence alignments of putative homologs using different iterated search procedures, prediction of local structure features including various backbone and burial properties, calibrated E-values for the significance of template searches of PDB and residue-residue contact predictions. The server has been validated as part of the CASP8 assessment of structure prediction as having good performance across all classes of predictions. The SAM-T08 server is available at http://compbio.soe.ucsc.edu/SAM_T08/T08-query.html.

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