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Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases.

Authors
  • Kishk, Ali1
  • Pacheco, Maria Pires1
  • Heurtaux, Tony1, 2
  • Sinkkonen, Lasse1
  • Pang, Jun3
  • Fritah, Sabrina4
  • Niclou, Simone P4
  • Sauter, Thomas1
  • 1 Department of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg. , (Luxembourg)
  • 2 Luxembourg Center of Neuropathology, L-3555 Dudelange, Luxembourg. , (Luxembourg)
  • 3 Department of Computer Science, University of Luxembourg, L-4364 Esch-sur-Alzette, Luxembourg. , (Luxembourg)
  • 4 NORLUX Neuro-Oncology Laboratory, Luxembourg Institute of Health, Department of Cancer Research, L-1526 Luxembourg, Luxembourg. , (Luxembourg)
Type
Published Article
Journal
Cells
Publisher
MDPI AG
Publication Date
Aug 10, 2022
Volume
11
Issue
16
Identifiers
DOI: 10.3390/cells11162486
PMID: 36010563
Source
Medline
Keywords
Language
English
License
Unknown

Abstract

Brain disorders represent 32% of the global disease burden, with 169 million Europeans affected. Constraint-based metabolic modelling and other approaches have been applied to predict new treatments for these and other diseases. Many recent studies focused on enhancing, among others, drug predictions by generating generic metabolic models of brain cells and on the contextualisation of the genome-scale metabolic models with expression data. Experimental flux rates were primarily used to constrain or validate the model inputs. Bi-cellular models were reconstructed to study the interaction between different cell types. This review highlights the evolution of genome-scale models for neurodegenerative diseases and glioma. We discuss the advantages and drawbacks of each approach and propose improvements, such as building bi-cellular models, tailoring the biomass formulations for glioma and refinement of the cerebrospinal fluid composition.

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