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Model system identification of novel congenital heart disease gene candidates: focus on RPL13.

Authors
  • Schroeder, Analyne M1
  • Allahyari, Massoud2
  • Vogler, Georg1
  • Missinato, Maria A1
  • Nielsen, Tanja1
  • Yu, Michael S1
  • Theis, Jeanne L3
  • Larsen, Lars A4
  • Goyal, Preeya5
  • Rosenfeld, Jill A6
  • Nelson, Timothy J3
  • Olson, Timothy M3
  • Colas, Alexandre R1
  • Grossfeld, Paul2
  • Bodmer, Rolf1
  • 1 Development, Aging and Regeneration Program, Sanford-Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
  • 2 Department of Pediatrics, UCSD School of Medicine, La Jolla, CA, USA.
  • 3 Division of Pediatric Cardiology, Department of Pediatric and Adolescent Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  • 4 Department of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark. , (Denmark)
  • 5 Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
  • 6 Baylor College of Medicine, Houston, TX, USA.
Type
Published Article
Journal
Human Molecular Genetics
Publisher
Oxford University Press
Publication Date
Dec 01, 2019
Volume
28
Issue
23
Pages
3954–3969
Identifiers
DOI: 10.1093/hmg/ddz213
PMID: 31625562
Source
Medline
Language
English
License
Unknown

Abstract

Genetics is a significant factor contributing to congenital heart disease (CHD), but our understanding of the genetic players and networks involved in CHD pathogenesis is limited. Here, we searched for de novo copy number variations (CNVs) in a cohort of 167 CHD patients to identify DNA segments containing potential pathogenic genes. Our search focused on new candidate disease genes within 19 deleted de novo CNVs, which did not cover known CHD genes. For this study, we developed an integrated high-throughput phenotypical platform to probe for defects in cardiogenesis and cardiac output in human induced pluripotent stem cell (iPSC)-derived multipotent cardiac progenitor (MCPs) cells and, in parallel, in the Drosophila in vivo heart model. Notably, knockdown (KD) in MCPs of RPL13, a ribosomal gene and SON, an RNA splicing cofactor, reduced proliferation and differentiation of cardiomyocytes, while increasing fibroblasts. In the fly, heart-specific RpL13 KD, predominantly at embryonic stages, resulted in a striking 'no heart' phenotype. KD of Son and Pdss2, among others, caused structural and functional defects, including reduced or abolished contractility, respectively. In summary, using a combination of human genetics and cardiac model systems, we identified new genes as candidates for causing human CHD, with particular emphasis on ribosomal genes, such as RPL13. This powerful, novel approach of combining cardiac phenotyping in human MCPs and in the in vivo Drosophila heart at high throughput will allow for testing large numbers of CHD candidates, based on patient genomic data, and for building upon existing genetic networks involved in heart development and disease. © The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: [email protected]

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