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Genome-wide association study of leaf chemistry traits in tobacco.

Authors
  • Tong, Zhijun1
  • Fang, Dunhuang1
  • Chen, Xuejun1
  • Jiao, Fangchan1
  • Zhang, Yihan1
  • Li, Yongping1
  • Xiao, Bingguang1
  • 1 Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming 650021, Yunnan, People's Republic of China. , (China)
Type
Published Article
Journal
Breeding science
Publication Date
Jun 01, 2020
Volume
70
Issue
3
Pages
253–264
Identifiers
DOI: 10.1270/jsbbs.19067
PMID: 32714047
Source
Medline
Keywords
Language
English
License
Unknown

Abstract

Leaf chemistry traits are some of the key factors influencing tobacco quality, which can be significantly reduced by lower chemical components in cured leaf. To improve tobacco quality through breeding, genetic diversity analysis, population structure analysis, and genome-wide association studies were performed in a panel of 347 tobacco germplasms and the markers associated with five leaf chemistry traits, including total sugar (TS), reducing sugar (RS), total nitrogen (TN), nicotine (NIC), and total potassium (TP) contents were identified. Four groups were classified at a genetic distance of 0.316 by genetic diversity analysis based on coefficient parameter NEI72 using a program NTSYS-pc2.10e, whereas four well-differentiated subpopulations were postulated in the 347 tobacco accessions. A total of 47 target trait-associated SNPs was detected in at least three environments as well as the best linear unbiased predictions (BLUPs) across all environments, among which two, two, four, six, and one highly suggestive associated SNPs were repeatedly detected in all environments and BLUPs for TS, RS, TN, NIC, and TP, respectively. On the basis of the phenotypic effects of the alleles corresponding to suggestive associated SNPs, five tobacco accessions harboring favorable alleles with elite phenotypic performance in leaf chemistry traits were identified. The results could facilitate quality tobacco breeding for higher leaf chemistry trait contents through molecular marker-assisted approaches. Copyright © 2020 by JAPANESE SOCIETY OF BREEDING.

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