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Flavobacterium sedimenticola sp. nov., isolated from sediment.

Authors
  • Wu, Ningning1
  • Liu, Le2, 3
  • Jiang, Xueting4
  • Yuan, Ye5
  • Mao, Dongmei4
  • Shao, Jiahui2, 3
  • He, Jian1, 3
  • Shen, Qirong2, 3
  • 1 Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China. , (China)
  • 2 College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China. , (China)
  • 3 Agricultural Microbial Resources Protection and Germplasm Innovation and Utilization Center of Jiangsu Province, Nanjing, Jiangsu 210095, PR China. , (China)
  • 4 Biological Experiment Center, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China. , (China)
  • 5 Department of Microbiology, College of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000, PR China. , (China)
Type
Published Article
Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Publisher
Microbiology Society
Publication Date
Dec 01, 2023
Volume
73
Issue
12
Identifiers
DOI: 10.1099/ijsem.0.006180
PMID: 38054484
Source
Medline
Keywords
Language
English
License
Unknown

Abstract

A novel yellow-pigmented bacterial strain, designated YZ-48T, was isolated from the sediment of the Yangtze River, PR China. Cells were Gram-stain-negative, non-motile, rod-shaped, strictly aerobic, catalase-positive and oxidase-positive. The strain grew optimally on R2A medium at 37 °C, pH 7.0 and with 1.0 % (w/v) NaCl. Strain YZ-48T showed the closest 16S rRNA gene sequence similarity to Flavobacterium solisilvae SE-s27T (96.4 %) and F. dankookense DSM 25687T (96.2 %). The phylogenetic trees based on 16S rRNA gene sequences showed that strain YZ-48T belonged to the genus Flavobacterium but formed a distinct phylogenetic lineage. The obtained average nucleotide identity and digital DNA-DNA hybridization values between YZ-48T and the two closest strains were 75.0 and 74.5 % and 19.6 and 19.0 %, respectively. The sole respiratory quinone was MK-6. The major polar lipids were phosphatidylethanolamine, two unidentified aminolipids and three unidentified polar lipids. The major cellular fatty acids were iso-C16 : 0, iso-C15 : 0, iso-C15 : 1 G, iso-C17 : 0 3-OH, iso-C15 : 0 3-OH and iso-C16 : 0 3-OH. The DNA G+C content was 40.2 mol%. Based on the phenotypic, chemotaxonomic, phylogenetic and genomic data, strain YZ-48T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium sedimenticola sp. nov. is proposed, with strain YZ-48T (=KCTC 82329T=CCTC AB 2023061T=MCCC 1K08804T) as the type strain.

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