Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

Guillaume Borrel; Panagiotis S. Adam; Luke J. McKay; Lin-Xing Chen; Isabel Natalia Sierra-García; Christian M. K. Sieber; Quentin Letourneur; Amine Ghozlane; Gary L. Andersen; Wen-Jun Li; Steven J. Hallam; Gerard Muyzer; Valéria Maia de Oliveira; William P. Inskeep; Jillian F. Banfield; Simonetta Gribaldo

doi:10.1038/s41564-019-0363-3

Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

Authors

Borrel, Guillaume¹
Adam, Panagiotis S.^{1, 2}
McKay, Luke J.³
Chen, Lin-Xing⁴
Sierra-García, Isabel Natalia⁵
Sieber, Christian M. K.^{4, 6}
Letourneur, Quentin⁷
Ghozlane, Amine⁷
Andersen, Gary L.⁸
Li, Wen-Jun⁹
Hallam, Steven J.¹⁰
Muyzer, Gerard¹¹
de Oliveira, Valéria Maia⁵
Inskeep, William P.¹²
Banfield, Jillian F.⁴
Gribaldo, Simonetta¹

¹ Institut Pasteur, Department of Microbiology, Unit Evolutionary Biology of the Microbial Cell, Paris, France , Paris (France)
² Université Paris Diderot, Sorbonne Paris Cité, Paris, France , Paris (France)
³ Montana State University, Center for Biofilm Engineering, Bozeman, MT, USA , Bozeman (United States)
⁴ University of California, Department of Earth and Planetary Sciences, Berkeley, CA, USA , Berkeley (United States)
⁵ Campinas University—UNICAMP, Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture, Campinas, Sao Paolo, Brazil , Campinas, Sao Paolo (Brazil)
⁶ Department of Energy Joint Genome Institute, Walnut Creek, CA, USA , Walnut Creek (United States)
⁷ Institut Pasteur, Bioinformatics and Biostatistics Hub, C3BI, Paris, France , Paris (France)
⁸ University of California, Department of Environmental Science, Policy, and Management, Berkeley, CA, USA , Berkeley (United States)
⁹ Sun Yat-Sen University, State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Guangzhou, China , Guangzhou (China)
¹⁰ University of British Columbia, Department of Microbiology & Immunology, ECOSCOPE Training Program, Graduate Program in Bioinformatics, and Genome Sciences and Technology Training Program, Vancouver, British Columbia, Canada , Vancouver (Canada)
¹¹ University of Amsterdam, Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, Amsterdam, The Netherlands , Amsterdam (Netherlands)
¹² Montana State University, Department of Land Resources and Environmental Sciences, Bozeman, MT, USA , Bozeman (United States)

Type

Published Article

Journal

Nature Microbiology

Publisher

Nature Publishing Group UK

Publication Date

Mar 04, 2019

Volume

Issue

Pages

603–613

Identifiers

DOI: 10.1038/s41564-019-0363-3

Source

Springer Nature

License

Yellow

Abstract

A search for methyl-coenzyme M reductase complex (MCR) and MCR-like homologues—which govern methane and short-chain alkane metabolism—across publicly available metagenomes reveals that these metabolic pathways are widespread and diverse in archaea, and may in some organisms be linked to alkane and/or fatty acid oxidation.

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