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Dot matrix pairwise sequence comparison.

Authors
Type
Published Article
Journal
Cold Spring Harbor Protocols
1559-6095
Publisher
Cold Spring Harbor Laboratory
Publication Date
Volume
2007
Identifiers
DOI: 10.1101/pdb.top31
PMID: 21357006
Source
Medline
License
Unknown

Abstract

INTRODUCTIONA dot matrix analysis is primarily a method for comparing two sequences to look for possible alignment of characters between the sequences. The method is also used for finding direct or inverted repeats in protein and DNA sequences, and for predicting regions in RNA that are self-complementary and that, therefore, have the potential of forming secondary structure through base-pairing.

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