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Disentangling the mechanisms shaping the surface ocean microbiota

Authors
  • Logares, Ramiro1, 2
  • Deutschmann, Ina M.1
  • Junger, Pedro C.3
  • Giner, Caterina R.1, 4
  • Krabberød, Anders K.2
  • Schmidt, Thomas S. B.5
  • Rubinat-Ripoll, Laura6
  • Mestre, Mireia1, 7, 8
  • Salazar, Guillem1, 9
  • Ruiz-González, Clara1
  • Sebastián, Marta1, 10
  • de Vargas, Colomban6
  • Acinas, Silvia G.1
  • Duarte, Carlos M.11
  • Gasol, Josep M.1, 12
  • Massana, Ramon1
  • 1 Institute of Marine Sciences (ICM), CSIC, Barcelona, Catalonia, 08003, Spain , Barcelona (Spain)
  • 2 University of Oslo, Oslo, 0316, Norway , Oslo (Norway)
  • 3 Universidade Federal de São Carlos (UFSCar), São Carlos, SP, 13565-905, Brazil , São Carlos (Brazil)
  • 4 Institute for the Oceans and Fisheries, University of British Columbia, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada , Vancouver (Canada)
  • 5 European Molecular Biology Laboratory, Meyerhofstr. 1, Heidelberg, 69117, Germany , Heidelberg (Germany)
  • 6 Sorbonne Universités, UPMC Univ Paris 06, CNRS UMR 7144, Adaptation et Diversité en Milieu Marin, Equipe EPEP, Station Biologique de Roscoff, Roscoff, 29680, France , Roscoff (France)
  • 7 Universidad de Concepción, Concepción, Chile , Concepción (Chile)
  • 8 Universidad Austral de Chile, Valdivia, Chile , Valdivia (Chile)
  • 9 ETH Zürich, Zürich, 8093, Switzerland , Zürich (Switzerland)
  • 10 Oceanography and Global Change Institute, IOCAG, University of Las Palmas de Gran Canaria, ULPGC, Gran Canaria, 35214, Spain , Gran Canaria (Spain)
  • 11 King Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC), Thuwal, Saudi Arabia , Thuwal (Saudi Arabia)
  • 12 Edith Cowan University, Joondalup, WA, Australia , Joondalup (Australia)
Type
Published Article
Journal
Microbiome
Publisher
Springer (Biomed Central Ltd.)
Publication Date
Apr 20, 2020
Volume
8
Issue
1
Identifiers
DOI: 10.1186/s40168-020-00827-8
Source
Springer Nature
Keywords
License
Green

Abstract

BackgroundThe ocean microbiota modulates global biogeochemical cycles and changes in its configuration may have large-scale consequences. Yet, the underlying ecological mechanisms structuring it are unclear. Here, we investigate how fundamental ecological mechanisms (selection, dispersal and ecological drift) shape the smallest members of the tropical and subtropical surface-ocean microbiota: prokaryotes and minute eukaryotes (picoeukaryotes). Furthermore, we investigate the agents exerting abiotic selection on this assemblage as well as the spatial patterns emerging from the action of ecological mechanisms. To explore this, we analysed the composition of surface-ocean prokaryotic and picoeukaryotic communities using DNA-sequence data (16S- and 18S-rRNA genes) collected during the circumglobal expeditions Malaspina-2010 and TARA-Oceans.ResultsWe found that the two main components of the tropical and subtropical surface-ocean microbiota, prokaryotes and picoeukaryotes, appear to be structured by different ecological mechanisms. Picoeukaryotic communities were predominantly structured by dispersal-limitation, while prokaryotic counterparts appeared to be shaped by the combined action of dispersal-limitation, selection and drift. Temperature-driven selection appeared as a major factor, out of a few selected factors, influencing species co-occurrence networks in prokaryotes but not in picoeukaryotes, indicating that association patterns may contribute to understand ocean microbiota structure and response to selection. Other measured abiotic variables seemed to have limited selective effects on community structure in the tropical and subtropical ocean. Picoeukaryotes displayed a higher spatial differentiation between communities and a higher distance decay when compared to prokaryotes, consistent with a scenario of higher dispersal limitation in the former after considering environmental heterogeneity. Lastly, random dynamics or drift seemed to have a more important role in structuring prokaryotic communities than picoeukaryotic counterparts.ConclusionsThe differential action of ecological mechanisms seems to cause contrasting biogeography, in the tropical and subtropical ocean, among the smallest surface plankton, prokaryotes and picoeukaryotes. This suggests that the idiosyncrasy of the main constituents of the ocean microbiota should be considered in order to understand its current and future configuration, which is especially relevant in a context of global change, where the reaction of surface ocean plankton to temperature increase is still unclear.Video Abstract

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