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CNpare: matching DNA copy number profiles.

Authors
  • Chaves-Urbano, Blas1
  • Hernando, Barbara1
  • Garcia, Maria J1
  • Macintyre, Geoff1
  • 1 Computational Oncology Group, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain. , (Spain)
Type
Published Article
Journal
Bioinformatics (Oxford, England)
Publication Date
May 31, 2022
Identifiers
DOI: 10.1093/bioinformatics/btac371
PMID: 35640971
Source
Medline
Language
English
License
Unknown

Abstract

Selecting the optimal cancer cell line for an experiment can be challenging given the diversity of lines available. Here, we present CNpare, which identifies similar cell line models based on genome-wide DNA copy number. CNpare is available as an R package at https://github.com/macintyrelab/CNpare. All analysis performed in the manuscript can be reproduced via the code found at https://github.com/macintyrelab/CNpare_analyses. Supplementary data are available at Bioinformatics online. © The Author(s) 2022. Published by Oxford University Press.

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