There is considerable interest in reliable and practical methods to sequester carbon (C) into agricultural soils to both reduce atmospheric greenhouse gas concentrations and improve conventional productivity. This article outlines a research methodology to refine the efficacy and economics of using long-lived C species (biochars) as stock feed additives, produced from farm waste biomass, for ecologically delivered soil biosequestration, while generating renewable bioenergy. This article also draws attention to potential parallel outputs including annual feed use efficiency, fodder species expansion, soil nutrient retention, aquatic habitat protection, and forestry revegetation, using nitrogen-fixing perennial fodder plant species. A methodology to generate parallel results including standing fodder tree C sequestration, optimised production of Acacia spp. biochar, animal growth on high-tannin fodder with biochar feed additives, soil nutrient and stable C fractions, and economics of Acacia spp. bioenergy production. This form of research is contextually dependent on the regional agricultural production system, legislation, and surrounding ecosystem. Therefore, this article suggests the use of a scenario approach to include regionally specific levels of biochar integration with respect to the local prices for C, fossil fuels, meat and livestock, fertilisers, fodder, feed additives, water, renewable energy, revegetation and capital.