Affordable Access

Publisher Website

iPath2.0: interactive pathway explorer

Authors
Journal
Nucleic Acids Research
0305-1048
Publisher
Oxford University Press
Publication Date
Volume
39
Identifiers
DOI: 10.1093/nar/gkr313
Keywords
  • Articles
Disciplines
  • Biology
  • Chemistry

Abstract

iPath2.0 is a web-based tool (http://pathways.embl.de) for the visualization and analysis of cellular pathways. Its primary map summarizes the metabolism in biological systems as annotated to date. Nodes in the map correspond to various chemical compounds and edges represent series of enzymatic reactions. In two other maps, iPath2.0 provides an overview of secondary metabolite biosynthesis and a hand-picked selection of important regulatory pathways and other functional modules, allowing a more general overview of protein functions in a genome or metagenome. iPath2.0′s main interface is an interactive Flash-based viewer, which allows users to easily navigate and explore the complex pathway maps. In addition to the default pre-computed overview maps, iPath offers several data mapping tools. Users can upload various types of data and completely customize all nodes and edges of iPath2.0′s maps. These customized maps give users an intuitive overview of their own data, guiding the analysis of various genomics and metagenomics projects.

There are no comments yet on this publication. Be the first to share your thoughts.

Statistics

Seen <100 times
0 Comments

More articles like this

iPath: interactive exploration of biochemical path...

on Trends in Biochemical Sciences March 2008

5 D 0→ 7 F 0transitions of Sm2+in SrMgF4:Sm2+

on Journal of Alloys and Compound... Jan 01, 2004

[Interactive pathway of ARF-mdm2-p53].

on Ai zheng = Aizheng = Chinese j... March 2003
More articles like this..