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연체동물 대량염기서열 분석을 위한 PANM 데이터베이스 버전 3 업데이트

Authors
  • kang, won
  • park, s y
  • hwang, h j
  • chung, j
  • sang, k
  • min, h r
  • e park, j
  • cho, h c
  • patnaik, b b
  • lee, y s
Publication Date
Jul 10, 2019
Source
KRIBB Repository
Keywords
License
Unknown
External links

Abstract

The PANM Database (Protostome DB) was constructed for the first in the year 2015. The aim of the construction was to provide a public platform for researchers to efficiently annotate the next-generation sequencing (NGS) data arising out of genome sequencing projects of species belonging to Arthropoda, Mollusca, and Nematoda (Protostome group). The web-based interface has paramount importance in improving the process of sequencing data with a greater number of noteworthy hits. In the subsequent year, we released an update to the database (PANM-DB v1.0) that contained twice the number of protein sequences (7,571,246) as compared to the original database and the inclusion of Cephalopod sequences. We now release the third database update (PANM-DB v3) with the incorporation of 11,615,243 protein sequences. The size of PANM-DB v3 is smaller, only 6% of NCBI nr database, and significantly reduces the NGS data annotation time. Like the previous versions of the database, PANM-DB v3 is freely downloadable from http://panm.sch.ac.kr/ for local BLAST analysis.

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