Baeza, J Antonio MacManes, Matthew
Published in
Marine genomics
The spiny lobster, Panulirus argus, is an ecologically relevant species in shallow water coral reefs and a target of the most lucrative fishery in the greater Caribbean region. This study reports, for the first time, the heart + hemolymph transcriptome of the Caribbean spiny lobster Panulirus argus assembled from short Illumina 150bp PE raw reads. ...
Dutta, Debabrata Awon, Vivek Kumar Gangopadhyay, Gaurab
Published in
Data in brief
We report here the data of transcriptome sequencing of control and infected sesame genotypes. Sesame is an emerging oilseed crop [1]. The destructive soil-borne fungi Macrophomina phaseolina Tassi (Goid) causes charcoal rot of sesame, leading to high (>50%) yield loss. Most of the high-yielding sesame cultivars (Sesamum indicum) of India are suscep...
Guo, Xiaofei Zhang, Jinlong Li, Yao Yang, Jing Li, Yihai Dong, Chunxiao Liu, Guoshi Lian, Zhengxing Zhang, Xiaosheng
Published in
Journal of Biological Research-Thessaloniki
BackgroundToll-like receptor 4 (TLR4) plays an important role in the elimination of Gram-negative bacteria infections and the initiation of antiinflammatory response. Using the technology of pronuclear microinjection, genetically modified (GM) sheep with TLR4 overexpression were generated. Previous studies have shown that these GM sheep exhibited a...
Kumar, Ashutosh Pareek, Vikas Faiq, Muneeb A Kumar, Pavan Kumari, Chiman Singh, Himanshu N Ghosh, Sanjib K
Published in
IBRO reports
Immunohistological investigations have given rise to divergent perspectives about adult hippocampal neurogenesis in humans. Therefore, this study aimed to examine whether a comprehensive transcriptomic analysis of signature markers of neurogenesis, supplemented with markers of gliogenesis, vasculogenesis, cell proliferation, and apoptosis, may help...
Huang, Hechen Ren, Zhigang Gao, Xingxing Hu, Xiaoyi Zhou, Yuan Jiang, Jianwen Lu, Haifeng Yin, Shengyong Ji, Junfang Zhou, Lin
...
Published in
Genome Medicine
BackgroundThe gut-liver axis plays a pivotal role in the pathogenesis of hepatocellular carcinoma (HCC). However, the correlations between the gut microbiome and the liver tumor transcriptome in patients with HCC and the impact of the gut microbiota on clinical outcome are less well-understood.MethodsFecal samples collected from HBV-related HCC pat...
Zhytnik, Lidiia Maasalu, Katre Reimann, Ene Märtson, Aare Kõks, Sulev
Published in
BMC Medical Genomics
BackgroundOsteogenesis imperfecta (OI) is a rare genetic disorder in which the patients suffer from numerous fractures, skeletal deformities and bluish sclera. The disorder ranges from a mild form to severe and lethal cases. The main objective of this pilot study was to compare the blood transcriptional landscape of OI patients with COL1A1 pathogen...
Akbar, Sehrish Wei, Yao Yuan, Yuan Khan, Muhammad Tahir Qin, Lifang Powell, Charles A. Chen, Baoshan Zhang, Muqing
Published in
BMC Plant Biology
BackgroundViruses are infectious pathogens, and plant virus epidemics can have devastating consequences to crop yield and quality. Sugarcane mosaic virus (SCMV, belonging to family Potyviridae) is one of the leading pathogens that affect the sugarcane crop every year. To combat the pathogens’ attack, plants generate reactive oxygen species (ROS) as...
Hettige, Pabodha Tahir, Uzma Nishikawa, Kiisa C. Gage, Matthew J.
Published in
BMC Genomics
BackgroundIndividual skeletal muscles have evolved to perform specific tasks based on their molecular composition. In general, muscle fibers are characterized as either fast-twitch or slow-twitch based on their myosin heavy chain isoform profiles. This approach made sense in the early days of muscle studies when SDS-PAGE was the primary tool for ma...
Xiao, Yufei Li, Junji Zhang, Ye Zhang, Xiaoning Liu, Hailong Qin, Zihai Chen, Bowen
Published in
BMC Genomics
BackgroundEucalyptus, a highly diverse genus of the Myrtaceae family, is the most widely planted hardwood in the world due to its increasing importance for fiber and energy. Somatic embryogenesis (SE) is one large-scale method to provide commercial use of the vegetative propagation of Eucalyptus and dedifferentiation is a key step for plant cells t...
Yang, Liandong Xu, Zetan Zeng, Honghui Sun, Ning Wu, Baosheng Wang, Cheng Bo, Jing Li, Lin Dong, Yang He, Shunping
...
Published in
BMC Genomics
BackgroundHundreds of genomes and transcriptomes of fish species have been sequenced in recent years. However, fish scholarship currently lacks a comprehensive, integrated, and up-to-date collection of fish genomic data.ResultsHere we present FishDB, the first database for fish multi-level omics data, available online at http://fishdb.ihb.ac.cn. Th...
