Guo, Li Ji, Mengjie Ye, Kai
Published in
BMC Genomics
BackgroundThe filamentous fungus Fusarium graminearum causes devastating crop diseases and produces harmful mycotoxins worldwide. Understanding the complex F. graminearum transcriptional regulatory networks (TRNs) is vital for effective disease management. Reconstructing F. graminearum dynamic TRNs, an NP (non-deterministic polynomial) -hard proble...
Ghaleb, Mohammed Abdullah Abdulraheem Li, Cong Shahid, Muhammad Qasim Yu, Hang Liang, Junhong Chen, Ruoxin Wu, Jinwen Liu, Xiangdong
Published in
BMC Plant Biology
BackgroundNeo-tetraploid rice, which is a new germplasm developed from autotetraploid rice, has a powerful biological and yield potential and could be used for commercial utilization. The length of panicle, as a part of rice panicle architecture, contributes greatly to high yield. However, little information about long panicle associated with heter...
Zerbib, Yoann Jenkins, Emily K. Shojaei, Maryam Meyers, Adrienne F. A. Ho, John Ball, T. Blake Keynan, Yoav Pisipati, Amarnath Kumar, Aseem Kumar, Anand
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Published in
BMC Medical Genomics
BackgroundInfluenza infections produce a spectrum of disease severity, ranging from a mild respiratory illness to respiratory failure and death. The host-response pathways associated with the progression to severe influenza disease are not well understood.MethodsTo gain insight into the disease mechanisms associated with progression to severe infec...
Liu, Yuhua Lv, Junheng Liu, Zhoubin Wang, Jing Yang, Bozhi Chen, Wenchao Ou, Lijun Dai, Xiongze Zhang, Zhuqing Zou, Xuexiao
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Published in
Food chemistry
To understand the mechanism of the color formation of pepper fruit, integrative analysis of the metabolome and transcriptome profiles was performed in pepper varieties with 4 different fruit colors. A total of 188 flavonoids were identified, and most of the anthocyanins, flavonols and flavones showed markedly higher abundances in purple variety tha...
Maurya, Ranjeet Singh, Yeshveer Sinha, Manisha Singh, Kunal Mishra, Pallavi Singh, Shreenivas Kumar Verma, Sandhya Prabha, Kanchan Kumar, Kamal Verma, Praveen Kumar
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Published in
3 Biotech
Necrotrophic pathogens experience host-generated oxidative stress during pathogenesis. They overcome such hostile environment by intricate mechanisms which are largely understudied. In this article, reference-based transcriptome analysis of a devastating Ascochyta Blight (AB) disease causing chickpea pathogen Ascochyta rabiei was explored to get in...
Soltani, Nourolah Best, Teo Grace, Dantria Nelms, Christen Shumaker, Ketia Romero-Severson, Jeanne Moses, Daniela Schuster, Stephan Staton, Margaret Carlson, John
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Published in
BMC Genomics
BackgroundClimate plays an essential role in forest health, and climate change may increase forest productivity losses due to abiotic and biotic stress. Increased temperature leads to the increased formation of ozone (O3). Ozone is formed by the interaction of sunlight, molecular oxygen and by the reactions of chemicals commonly found in industrial...
Olsson, Sanna Grivet, Delphine Cattonaro, Federica Vendramin, Vera Giovannelli, Guia Scotti-Saintagne, Caroline Vendramin, Giovanni G. Fady, Bruno
Published in
Tree Genetics & Genomes
European black pine (Pinus nigra J.F.Arnold) is an ecologically and economically important conifer growing across southern Europe and the Mediterranean Basin in a variety of habitats. Its morphological and ecological variabilities as well as geographic origin are the basis for subspecies level taxonomic identification and forestry practice recommen...
Han, Bing Ma, Xiaoding Cui, Di Wang, Yanjie Geng, Leiyue Cao, Guilan Zhang, Hui Han, Longzhi
Published in
Rice
AbstractIn this study, the cold-tolerance capacity of 133 varieties of weedy rice was evaluated based on the comprehensive evaluation index D, with Kongyu 131 used as a cold-tolerant control. A total of 39.8% of the 133 varieties were considered ‘strong’, indicating that weedy rice populations indeed have relatively strong cold-tolerance capacity a...
Kashyap, Amita Rhodes, Adelaide Kronmiller, Brent Berger, Josie Champagne, Ashley Davis, Edward W. Finnegan, Mitchell V. Geniza, Matthew Hendrix, David A. Löhr, Christiane V.
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Published in
BMC Genomics
BackgroundLong noncoding RNAs (lncRNAs) have roles in gene regulation, epigenetics, and molecular scaffolding and it is hypothesized that they underlie some mammalian evolutionary adaptations. However, for many mammalian species, the absence of a genome assembly precludes the comprehensive identification of lncRNAs. The genome of the American beave...
Zhang, Xinyu Cheng, Wenhan Feng, Zhidi Zhu, Qianhao Sun, Yuqiang Li, Yanjun Sun, Jie
Published in
BMC Genomics
BackgroundCotton Verticillium wilt is one of the most devastating diseases for cotton production in the world. Although this diseases have been widely studied at the molecular level from pathogens, the molecular basis of V. dahliae interacted with cotton has not been well examined.ResultsIn this study, RNA-seq analysis was carried out on V. dahliae...
