Published in Scientific Reports
Third-generation sequencing technologies allow to sequence long reads of tens of kbp, that are expected to solve various problems. However, they display high error rates, currently capped around 10%. Self-correction is thus regularly used in long reads analysis projects. We introduce CONSENT, a new self-correction method that relies both on multipl...
Food refrigeration is essential to maintain microbiological quality but it accounts for high energy impact. An integrative modelling approach was developed to estimate the impact of increasing refrigeration temperature in the processing plant, on energy consumption, products temperatures, and the food product microbiology. The food product was a pa...
Published in Scientific Reports
In many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation. However, keeping track of these annotations to ensure a high-quality multi-purpose data set is a challenging and labour intensive task. We developed the open-source online platform EXACT (EXpert Algorithm Coll...
Published in Oral radiology
Studies on software accuracy of reformatted panoramic computed tomography (CT) images are scarce. The aim of this study was to evaluate the software accuracy of reformatted panoramic views from cone-beam computed tomography (CBCT). Ten dry mandibles were scanned using CBCT with different voxel sizes. Following the reconstruction of panoramic views ...
Detectar estresse hídrico na planta com antecedência é uma maneira de obter maior produtividade no campo. Com esse objetivo, foi criado o ThermalApp. O dispositivo eletrônico tem a finalidade de capturar e processar imagens térmicas de plantas, de modo a detectar se há algum nível de estresse hídrico. / bitstream/item/224161/1/jt-p33.pdf
Published in Scientific Reports
Cellular micromotion—a tiny movement of cell membranes on the nm-µm scale—has been proposed as a pathway for inter-cellular signal transduction and as a label-free proxy signal to neural activity. Here we harness several recent approaches of signal processing to detect such micromotion in video recordings of unlabeled cells. Our survey includes spe...
Published in Scientific Reports
Protein structure prediction is an important problem in bioinformatics and has been studied for decades. However, there are still few open-source comprehensive protein structure prediction packages publicly available in the field. In this paper, we present our latest open-source protein tertiary structure prediction system—MULTICOM2, an integration...
Published in Scientific Reports
Recent advances in neuroscience have enabled the exploration of brain structure at the level of individual synaptic connections. These connectomics datasets continue to grow in size and complexity; methods to search for and identify interesting graph patterns offer a promising approach to quickly reduce data dimensionality and enable discovery. The...
Published in Mobile DNA
Transposable elements (TEs) play powerful and varied evolutionary and functional roles, and are widespread in most eukaryotic genomes. Research into their unique biology has driven the creation of a large collection of databases, software, classification systems, and annotation guidelines. The diversity of available TE-related methods and resources...
Tato bakalářská práce se zabývá problematikou metrologických SW v kategoriích, jako: dlouhodobé ukládání dat, komunikace, download SW. Problém bude řešen s využitím technologií Cloud Computing a podle metodiky Welmec Guide 7.2. Práce bude rozdělena na dvě části: teoretická část a praktická část. Cílem teoretické části práce je specifikovat vlastnos...
