Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.
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Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes.
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Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex.
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Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacteri...
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BACKGROUND Two of the most important pathogens contributing to the global rise in antimicrobial resistance (AMR) are Klebsiella pneumoniae and Enterobacter cloacae. Despite this, most of our knowledge about the changing patterns of disease caused by these two pathogens is based on studies with limited timeframes that provide few insights into their...
Genome-wide epistasis and co-selection study using mutual information.
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Domestication of Campylobacter jejuni NCTC 11168.
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Reference and type strains of well-known bacteria have been a cornerstone of microbiology research for decades. The sharing of well-characterized isolates among laboratories has run in parallel with research efforts and enhanced the reproducibility of experiments, leading to a wealth of knowledge about trait variation in different species and the u...
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.
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Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene...
The incidence of infections caused by extraintestinal Escherichia coli (ExPEC) is rising globally, which is a major public health concern. ExPEC strains that are resistant to antimicrobials have been associated with excess mortality, prolonged hospital stays, and higher health care costs. E. coli sequence type 131 (ST131) is a major ExPEC clonal gr...
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plant...
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Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34
© 2019 Subedi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Bacteria can acquire an accessory genome through the horizontal transfer of genetic elements ...
