Chen, Ji-Chun Xie, Tian-Ao Lin, Zhen-Zong Li, Yi-Qing Xie, Yu-Fei Li, Zhong-Wei Guo, Xu-Guang
Published in
Biochemical genetics
COVID-19 is a serious infectious disease that has recently swept the world, and research on its causative virus, SARS-CoV-2, remains insufficient. Therefore, this study uses bioinformatics analysis techniques to explore the human digestive tract diseases that may be caused by SARS-CoV-2 infection. The gene expression profile data set, numbered GSE1...
Inglese, P Huang, HX Wu, V Lewis, MR Takats, Z
Abstract
Background
Mass spectrometry imaging (MSI) data often consist of tens of thousands of mass spectra collected from a sample surface. During the time necessary to perform a single acquisition, it is likely that uncontrollable factors alter the validity of the initial mass calibration of the instrument, resulting in mass errors of magnitude sig...
Kubiszeski, Janaina Rigotti da Silva, David José Ferreira Menezes, Gabriela de Lima da Silva, Roosevelt Alves Zini, Nathalia Nogueira, Maurício Lacerda Pena, Lindomar José Piccoli, Julia Pinto Cilli, Eduardo Maffud da Silva, Joaquim Manoel
...
Published in
Journal of immunological methods
The use of serological tests is valuable to diagnose Zika virus (ZIKV) infection and carry out epidemiological surveillance. However, ZIKV serological tests may result in false positives due to cross-reactivity between antibodies against other Flavivirus, especially dengue virus that worldwide disseminated. We used three online tools to predict ami...
Liang, Bo Zhou, Yan Jiao, Jiji Xu, Lixia Yan, Yan Wu, Qiaoli Tong, Xiaoguang Yan, Hua
Published in
Frontiers in Oncology
Medulloblastoma is the neuroepithelial tumor with the highest degree of malignancy in the central nervous system, accounting for about 8% to 10% of children’s brain tumors. It has a high degree of malignancy and is easily transmitted through cerebrospinal fluid, with a relatively poor prognosis. Although medulloblastoma has been widely studied and ...
Inglese, P Huang, X Wu, V Lewis, M Takats, Z
Background Mass spectrometry imaging (MSI) data often consist of tens of thousands of mass spectra collected from a sample surface. During the time necessary to perform a single acquisition, it is likely that uncontrollable factors alter the validity of the initial mass calibration of the instrument, resulting in mass errors of magnitude significan...
Perez Martell, Raul I Ziesel, Alison Jabbari, Hosna Stege, Ulrike
Published in
BMC bioinformatics
Deep learning has become a prevalent method in identifying genomic regulatory sequences such as promoters. In a number of recent papers, the performance of deep learning models has continually been reported as an improvement over alternatives for sequence-based promoter recognition. However, the performance improvements in these models do not accou...
Suomi, Tomi Elo, Laura L
Published in
Immunology letters
Mass spectrometry proteomics has become an important part of modern immunology, making major contributions to understanding protein expression levels, subcellular localizations, posttranslational modifications, and interactions in various immune cell populations. New developments in both experimental and computational techniques offer increasing op...
Yao, Ziping Zhang, Bihui Niu, Guochen Yan, Ziguang Tong, Xiaoqiang Zou, Yinghua Yang, Min
Published in
Frontiers in Cardiovascular Medicine
Background The pathophysiological mechanisms of intermittent claudication (IC) progression to chronic limb-threatening ischemia (CLTI) are still vague and which of patients with IC will become CLTI are unknown. This study aimed to investigate the key molecules and pathways mediating IC progression to CLTI by a quantitative bioinformatic analysis of...
Büyük, İlker Okay, Aybüke Aras, Sümer
Published in
Biochemical genetics
SHI-Related Sequence (SRS) transcription factors comprise a protein family with important roles in growth and development. However, the genome-wide study of the SRS protein family has not yet been carried out in the common bean. For this reason, the SRS family has been characterized in depth at both gene and protein levels and several bioinformatic...
Zhang, Jeffrey X Chey, YoonChung Paik, David T
Published in
Trends in cardiovascular medicine
