Editor's introduction to this issue (G&I 18:3, 2020).
Published in Genomics & informatics
Computational analysis of SARS-CoV-2, SARS-CoV, and MERS-CoV genome using MEGA.
Published in Genomics & informatics
The novel coronavirus pandemic that has originated from China and spread throughout the world in three months. Genome of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) predecessor, severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) play an important role in understandin...
Confidence intervals for the COVID-19 neutralizing antibody retention rate in the Korean population.
Published in Genomics & informatics
The coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a global pandemic. No specific therapeutic agents or vaccines for COVID-19 are available, though several antiviral drugs, are under investigation as treatment agents for COVID-19. The use of convalescent plasma transfusion tha...
Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2...
Published in Genomics & informatics
Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. ...
Organizing an in-class hackathon to correct PDF-to-text conversion errors of Genomics & Informatics 1.0.
...Published in Genomics & informatics
This paper describes a community effort to improve earlier versions of the full-text corpus of Genomics & Informatics by semi-automatically detecting and correcting PDF-to-text conversion errors and optical character recognition errors during the first hackathon of Genomics & Informatics Annotation Hackathon (GIAH) event. Extracting text from multi...
Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba.
Published in Genomics & informatics
The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,5...
The comparative gene expression concern to the seed pigmentation in maize (Zea mays L.).
Published in Genomics & informatics
Maize seed pigmentation is one of the important issue to develop maize seed breeding. The differently gene expression was characterized and compared for three inbred lines, such as the pigment accumulated seed (CM22) and non-pigmented seed (CM5 and CM19) at 10 days after pollination. We obtained a total of 63,870, 82,496, and 54,555 contigs by de n...
Impact of type 2 diabetes variants identified through genome-wide association studies in early-onset type 2 diabetes fro...
Published in Genomics & informatics
The prevalence of early-onset type 2 diabetes (EOT2D) is increasing in Asian countries. Genome-wide association studies performed in European and various other populations have identified associations of numerous variants with type 2 diabetes in adults. However, the genetic component of EOT2D which is still unexplored could have similarities with l...
A semi-automatic cell type annotation method for single-cell RNA sequencing dataset.
Published in Genomics & informatics
Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. Accordingly, numerous analysis methods have been developed. As it involves simultaneous analyses of many cell and genes, efficiency of the methods is crucial. The conventional cell type annotation me...
Editor’s introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6)
Published in Genomics & Informatics
