The Sequence Alerting Server--a new WEB server.
Published in Computer applications in the biosciences : CABIOS
The server address is http://www.bork.embl-heidelberg.de/alerting/.
SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements.
Published in Computer applications in the biosciences : CABIOS
This paper discusses the implementation of a three-dimensional (3D) structure motif search of proteins. Each protein structure is represented by a set of secondary structure elements (SSEs) which involves alpha-helix segments and beta-strand segments. In describing it, every SSE is further reduced into a two-node graph that consists of the starting...
Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR.
Published in Computer applications in the biosciences : CABIOS
The software can be downloaded from http://www.grad.ttuhsc.edu/archive/. A brief summary in both HTML and Microsoft Word 6 format of the installation and use of the software is also located at this website.
BioWish: a molecular biology command extension to Tcl/Tk.
Published in Computer applications in the biosciences : CABIOS
SAMBA: hardware accelerator for biological sequence comparison.
Published in Computer applications in the biosciences : CABIOS
SAMBA can be tested on the WEB server at URL http://www.irisa.fr/SAMBA/.
Two applications to facilitate the viewing of database search result files on the Macintosh.
Published in Computer applications in the biosciences : CABIOS
The programs can be obtained via anonymous ftp from ftp.ri.bbsrc.ac.uk from the directory/pub/software/MacBOB, or via WWW from the Roslin Institute Home Page (http://www.ri.bbsrc.ac.uk/).
A genetic algorithm for multiple molecular sequence alignment.
Published in Computer applications in the biosciences : CABIOS
A C program on UNIX has been written to implement the technique. It is available on request from the authors.
XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
Published in Computer applications in the biosciences : CABIOS
XDOM is available free of charge by anonymous ftp:¿¿ftp://ftp.toulouse.inra.fr/pub/xdom¿ ¿. The ProDom database can be consulted at ¿¿http://protein.toulouse.inra.fr/prodom.html¿¿.
A software tool for the analysis of mass spectrometric disulfide mapping experiments.
Published in Computer applications in the biosciences : CABIOS
Displaying the information contents of structural RNA alignments: the structure logos.
Published in Computer applications in the biosciences : CABIOS
The code is available from, and an Internet server can be used to run the program at, http://www.cbs.dtu.dk/gorodkin/appl/slogo. html.
