Broquard, Coralie Saowaros, Suwansa-ard Lepoittevin, Mélanie Degremont, Lionel Lamy, Jean-Baptiste Morga, Benjamin Elizur, Abigail Martinez, Anne-Sophie
Published in
BMC Genomics
BackgroundIn the animal kingdom, mollusca is an important phylum of the Lophotrochozoa. However, few studies have investigated the molecular cascade of sex determination/early gonadal differentiation within this phylum. The oyster Crassostrea gigas is a sequential irregular hermaphrodite mollusc of economic, physiological and phylogenetic importanc...
Dong, Nancy Bandura, Julia Zhang, Zhaolei Wang, Yan Labadie, Karine Noel, Benjamin Davison, Angus Koene, Joris M. Sun, Hong-Shuo Coutellec, Marie-Agnès
...
Published in
BMC Genomics
BackgroundThe pond snail Lymnaea stagnalis (L. stagnalis) has been widely used as a model organism in neurobiology, ecotoxicology, and parasitology due to the relative simplicity of its central nervous system (CNS). However, its usefulness is restricted by a limited availability of transcriptome data. While sequence information for the L. stagnalis...
Chankeaw, Wiruntita Lignier, Sandra Richard, Christophe Ntallaris, Theodoros Raliou, Mariam Guo, Yongzhi Plassard, Damien Bevilacqua, Claudia Sandra, Olivier Andersson, Göran
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Published in
BMC Genomics
BackgroundIn post-partum dairy cows, the energy needs to satisfy high milk production induces a status of more or less pronounced Negative Energy Balance (NEB). NEB associated with fat mobilization impairs reproductive function. In a companion paper, we described constitutive gene expression in the three main endometrial cell types (stromal, glandu...
Howard, Nicholas P. Troggio, Michela Durel, Charles-Eric Muranty, Hélène Denancé, Caroline Bianco, Luca Tillman, John van de Weg, Eric
Published in
BMC Genomics
BackgroundSingle nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies. As new arrays are developed to take advantage of new technology and of improved probe design using new genome sequence and panel data, a need to integrate data from different arrays and arra...
Sinha, Dhiraj Sun, Xifeng Khare, Mudra Drancourt, Michel Raoult, Didier Fournier, Pierre-Edouard
Published in
BMC Genomics
BackgroundStreptococcus intermedius, a member of the S. anginosus group, is a commensal bacterium present in the normal microbiota of human mucosal surfaces of the oral, gastrointestinal, and urogenital tracts. However, it has been associated with various infections such as liver and brain abscesses, bacteremia, osteo-articular infections, and endo...
Cassan, Océane Lèbre, Sophie Martin, Antoine
Published in
BMC Genomics
BackgroundHigh-throughput transcriptomic datasets are often examined to discover new actors and regulators of a biological response. To this end, graphical interfaces have been developed and allow a broad range of users to conduct standard analyses from RNA-seq data, even with little programming experience. Although existing solutions usually provi...
Christiansen, Henrik Heindler, Franz M. Hellemans, Bart Jossart, Quentin Pasotti, Francesca Robert, Henri Verheye, Marie Danis, Bruno Kochzius, Marc Leliaert, Frederik
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Published in
BMC Genomics
Background Genome-wide data are invaluable to characterize differentiation and adaptation of natural populations. Reduced representation sequencing (RRS) subsamples a genome repeatedly across many individuals. However, RRS requires careful optimization and fine-tuning to deliver high marker density while being cost-efficient. The number of genomic ...
Nzoyikorera, Néhémie Diawara, Idrissa Fresia, Pablo Maaloum, Fakhreddine Katfy, Khalid Nayme, Kaotar Maaloum, Mossaab Cornick, Jennifer Chaguza, Chrispin Timinouni, Mohammed
...
Published in
BMC Genomics
BackgroundStreptococcus pneumoniae serotype 1 remains a leading cause of invasive pneumococcal diseases, even in countries with PCV-10/PCV-13 vaccine implementation. The main objective of this study, which is part of the Pneumococcal African Genome project (PAGe), was to determine the phylogenetic relationships of serotype 1 isolates recovered from...
Zhang, Hao Bian, Ce Tu, Simei Yin, Fanxing Guo, Panpan Zhang, Jian Song, Xiaotong Liu, Qingyang Chen, Chen Han, Yanshuo
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Published in
BMC Genomics
Background Many studies on long chain non-coding RNAs (lncRNAs) are published in recent years. But the roles of lncRNAs in aortic dissection (AD) are still unclear and should be further examined. The present work focused on determining the molecular mechanisms underlying lncRNAs regulation in aortic dissection on the basis of the lncRNA-miRNA-mRNA ...
Liu, Guangdong Li, Haihong Ji, Wenyang Gong, Haidong Jiang, Yan Ji, Guomin Liu, Guangyao
Published in
BMC Genomics
Background Glioma is the most common central nervous system tumor with a poor survival rate and prognosis. Previous studies have found that long non-coding RNA (lncRNA) and competitive endogenous RNA (ceRNA) play important roles in regulating various tumor mechanisms. We obtained RNA-Seq data of glioma and normal brain tissue samples from TCGA and ...
